PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G2026
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 616aa    MW: 70551.6 Da    PI: 7.6304
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G2026genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.42.3e-29227312187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +++g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Gh_D01G2026 227 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMcEDHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 312
                  8***********************************99899*****************************98..55667*******85 PP

2trihelix46.87.5e-15490562283
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                  W++ ev  Li++++ me     g++++ lWeev++km+  gfe+s+ +Ck kwe++  +  k k++++kr    +++c y++
  Gh_D01G2026 490 WQETEVSRLIQLKTTME-----GCSEEILWEEVAAKMACLGFEKSALMCKTKWESIGAYLMKNKDSNRKR----KENCDYYH 562
                  ************99987.....678888****************************************97....56899998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.043224287IPR001005SANT/Myb domain
PROSITE profilePS500906.98226285IPR017877Myb-like domain
PfamPF138371.9E-19227313No hitNo description
CDDcd122037.72E-21227292No hitNo description
PROSITE profilePS500906.353482541IPR017877Myb-like domain
SMARTSM0071717486543IPR001005SANT/Myb domain
PfamPF138372.7E-11488563No hitNo description
CDDcd122033.15E-15490548No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MCPSVTLSFL LLLLLLHAAI RVFLPPLSFY FVHTSEKCPF FFSLSRTLPQ CHYHCIRTFI  60
HIWDHCPLLQ YSSFFVKDTI PTPLLFLDSL LSSLHYSFHS NMEMENHHHH HHQHHQYGMP  120
DLRQLLNGRP SHFQTVQQGS ELFSSGDRNL PPLQHHHQFD MMQMVGRQVV GHELMPRGGL  180
HHEFSSAAAA TPTAAMAAAV NSGSTPSASC GFEGEAIAFG GDGGTGRWPR QETLTLLEIR  240
SRLDPKFKEA NQKGPLWDEV SRIMCEDHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD  300
GKHYRFFRQL EALYGESSNS VSGHQFTGNG FGFHGTQNCN IGHSQKLCDS LSLSNSFEFE  360
PSSSDDNDLS TEMEINGGSS EKRKKKRSGG GSSKCWKAKI KEFIDLQMRK LMDRQETWLE  420
KLTKTLEEKE KERVLREEQW RKEEAARIER EQKLWAKERA RIEARDSALM EALQNLTGKQ  480
LKEIVKPDDW QETEVSRLIQ LKTTMEGCSE EILWEEVAAK MACLGFEKSA LMCKTKWESI  540
GAYLMKNKDS NRKRKENCDY YHNNNEPLYS DSVSHSNATA GAAGNGVNDS CFRFLMADGE  600
NYWESYGLKL NKGENQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012468199.10.0PREDICTED: trihelix transcription factor PTL-like
SwissprotQ9LZS01e-131PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A0D2MFC40.0A0A0D2MFC4_G
STRINGVIT_08s0007g03820.t011e-175(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-107Trihelix family protein